Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.
| Version: | 2.0.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | aplot, dplyr, ggplot2, grid, ggh4x, readr, tibble, tidyr, ggprism, patchwork, ggplotify, magrittr, progress, stats, methods, grDevices, utils |
| Suggests: | Biobase, KEGGREST, ComplexHeatmap, BiocGenerics, knitr, rmarkdown, testthat (≥ 3.0.0), ALDEx2, DESeq2, edgeR, GGally, limma, Maaslin2, metagenomeSeq, MicrobiomeStat, SummarizedExperiment, circlize, lefser |
| Published: | 2025-04-03 |
| DOI: | 10.32614/CRAN.package.ggpicrust2 |
| Author: | Chen Yang [aut, cre], Liangliang Zhang [aut] |
| Maintainer: | Chen Yang <cafferychen7850 at gmail.com> |
| BugReports: | https://github.com/cafferychen777/ggpicrust2/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/cafferychen777/ggpicrust2, https://cafferyang.com/ggpicrust2/ |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | ggpicrust2 results |
| Reference manual: | ggpicrust2.pdf |
| Package source: | ggpicrust2_2.0.0.tar.gz |
| Windows binaries: | r-devel: ggpicrust2_2.0.0.zip, r-release: ggpicrust2_2.0.0.zip, r-oldrel: ggpicrust2_2.0.0.zip |
| macOS binaries: | r-devel (arm64): ggpicrust2_2.0.0.tgz, r-release (arm64): ggpicrust2_2.0.0.tgz, r-oldrel (arm64): ggpicrust2_2.0.0.tgz, r-devel (x86_64): ggpicrust2_2.0.0.tgz, r-release (x86_64): ggpicrust2_2.0.0.tgz, r-oldrel (x86_64): ggpicrust2_2.0.0.tgz |
| Old sources: | ggpicrust2 archive |
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